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Table 3 Ciliary GO terms used in experimental annotations of mouse genes

From: Sensing the cilium, digital capture of ciliary data for comparative genomics investigations

#

GO aspect

GO ID

GO term name

Used in 2013

Used in 2016

Note

1

BP

GO:0001539

Ciliary or bacterial-type flagellar motility

Y

N

Term was too general for annotation of mouse genes; annotations were moved to a more specific term

2

BP

GO:0035083

Cilium axoneme assembly

Y

N

Merged into GO:0035082 “axoneme assembly”

3

BP

GO:0042384

Cilium morphogenesis

Y

N

Originally named “cilium assembly” before merge of GO:0060271 and GO:0042384 (IDs switched)

4

BP

GO:0035058

Non-motile primary cilium assembly

Y

N

Merged into GO:1905515 “non-motile cilium assembly”

5

CC

GO:0035085

Cilium axoneme

Y

N

Merged into GO:0005930 “axoneme”

6

CC

GO:0031512

Motile primary cilium

Y

N

Merged into GO:0031514 “motile cilium”

7

CC

GO:0031513

Non-motile primary cilium

Y

N

Merged into GO:0097730 “non-motile cilium”

8

CC

GO:0072372

Primary cilium

Y

N

Merged into GO:0005929 “cilium”

9

BP

GO:0070286

Axonemal dynein complex assembly

Y

Y

Modified by GOC/SYSCILIA project

10

BP

GO:0060404

Axonemal microtubule depolymerization

Y

Y

Modified by GOC/SYSCILIA project

11

BP

GO:0035082

Axoneme assembly

Y

Y

Modified by GOC/SYSCILIA project

12

BP

GO:0060830

Ciliary receptor clustering involved in smoothened signaling pathway

Y

Y

Modified by GOC/SYSCILIA project

13

BP

GO:0060271

Cilium assembly

Y

Y

Modified by GOC/SYSCILIA project; ID changed due to merge with GO:0042384 to remove “cilium morphogenesis” as a GO term

14

BP

GO:0003341

Cilium movement

Y

Y

 

15

BP

GO:0044782

Cilium organization

Y

Y

Added by GOC/SYSCILIA project

16

BP

GO:0060285

Cilium-dependent cell motility (a)

Y

Y

Modified by GOC/SYSCILIA project

17

BP

GO:0003351

Epithelial cilium movement

Y

Y

 

18

BP

GO:0060287

Epithelial cilium movement involved in determination of left/right asymmetry

Y

Y

 

19

BP

GO:0030317

Flagellated sperm motility (a)

Y

Y

Modified by GOC/SYSCILIA project

20

BP

GO:0036159

Inner dynein arm assembly

Y

Y

 

21

BP

GO:0035721

Intraciliary retrograde transport (a)

Y

Y

Modified by GOC/SYSCILIA project

22

BP

GO:0042073

Intraciliary transport (a)

Y

Y

Modified by GOC/SYSCILIA project

23

BP

GO:0044458

Motile cilium assembly

Y

Y

Added by GOC/SYSCILIA project

24

BP

GO:0036158

Outer dynein arm assembly

Y

Y

 

25

BP

GO:0045724

Positive regulation of cilium assembly

Y

Y

Modified by GOC/SYSCILIA project

26

BP

GO:1901248

Positive regulation of lung ciliated cell differentiation

Y

Y

 

27

BP

GO:0061512

Protein localization to cilium

Y

Y

Added by other

28

BP

GO:1902017

Regulation of cilium assembly

Y

Y

Added by GOC/SYSCILIA project

29

BP

GO:0003356

Regulation of cilium beat frequency

Y

Y

 

30

BP

GO:0060296

Regulation of cilium beat frequency involved in ciliary motility

Y

Y

Modified by GOC/SYSCILIA project

31

BP

GO:0007288

Sperm axoneme assembly

Y

Y

Modified by GOC/SYSCILIA project

32

CC

GO:0005858

Axonemal dynein complex

Y

Y

Modified by GOC/SYSCILIA project

33

CC

GO:0005930

Axoneme

Y

Y

Modified by GOC/SYSCILIA project

34

CC

GO:0034464

BBSome

Y

Y

Modified by GOC/SYSCILIA project

35

CC

GO:0036064

Ciliary basal body (a)

Y

Y

Modified by GOC/SYSCILIA project

36

CC

GO:0060170

Ciliary membrane (a)

Y

Y

Modified by GOC/SYSCILIA project

37

CC

GO:0035253

Ciliary rootlet

Y

Y

Modified by GOC/SYSCILIA project

38

CC

GO:0035869

Ciliary transition zone

Y

Y

Modified by GOC/SYSCILIA project

39

CC

GO:0005929

Cilium

Y

Y

Modified by GOC/SYSCILIA project

40

CC

GO:0030991

Intraciliary transport particle A (a)

Y

Y

Modified by GOC/SYSCILIA project

41

CC

GO:0030992

Intraciliary transport particle B (a)

Y

Y

Modified by GOC/SYSCILIA project

42

CC

GO:0036038

MKS complex (a)

Y

Y

Modified by GOC/SYSCILIA project

43

CC

GO:0031514

Motile cilium

Y

Y

Modified by GOC/SYSCILIA project

44

CC

GO:0036157

Outer dynein arm

Y

Y

 

45

CC

GO:0032391

Photoreceptor connecting cilium

Y

Y

Modified by GOC/SYSCILIA project

46

CC

GO:0001750

Photoreceptor outer segment

Y

Y

Modified by GOC/SYSCILIA project

47

CC

GO:0036126

Sperm flagellum

Y

Y

Modified by GOC/SYSCILIA project

48

CC

GO:0097225

Sperm midpiece

Y

Y

 

49

BP

GO:1904158

Axonemal central apparatus assembly

N

Y

Added by GOC/SYSCILIA project

50

BP

GO:0032053

Ciliary basal body organization

N

Y

Modified by GOC/SYSCILIA project

51

BP

GO:0060294

Cilium movement involved in cell motility

N

Y

 

52

BP

GO:0035720

Intraciliary anterograde transport

N

Y

Modified by GOC/SYSCILIA project

53

BP

GO:0035735

Intraciliary transport involved in cilium assembly

N

Y

Modified by GOC/SYSCILIA project

54

BP

GO:1903251

Multiciliated epithelial cell differentiation

N

Y

Added by other

55

BP

GO:1902018

Negative regulation of cilium assembly

N

Y

Added by GOC/SYSCILIA project

56

BP

GO:1902856

Negative regulation of non-motile cilium assembly

N

Y

Added by GOC/SYSCILIA project

57

BP

GO:1903568

Negative regulation of protein localization to ciliary membrane

N

Y

Added by GOC/SYSCILIA project

58

BP

GO:1903565

Negative regulation of protein localization to cilium

N

Y

Added by GOC/SYSCILIA project

59

BP

GO:1905515

Non-motile cilium assembly

N

Y

Added by GOC/SYSCILIA project

60

BP

GO:0003353

Positive regulation of cilium movement

N

Y

 

61

BP

GO:1902857

Positive regulation of non-motile cilium assembly

N

Y

Added by GOC/SYSCILIA project

62

BP

GO:1903566

Positive regulation of protein localization to cilium

N

Y

Added by GOC/SYSCILIA project

63

BP

GO:1903441

Protein localization to ciliary membrane

N

Y

Added by GOC/SYSCILIA project

64

BP

GO:1904491

Protein localization to ciliary transition zone

N

Y

Added by other

65

BP

GO:0097499

Protein localization to non-motile cilium

N

Y

Added by GOC/SYSCILIA project

66

BP

GO:1903621

Protein localization to photoreceptor connecting cilium

N

Y

Added by other

67

BP

GO:1903546

Protein localization to photoreceptor outer segment

N

Y

Added by other

68

BP

GO:1903445

Protein transport from ciliary membrane to plasma membrane

N

Y

Added by GOC/SYSCILIA project

69

BP

GO:0097500

Receptor localization to non-motile cilium

N

Y

Added by GOC/SYSCILIA project

70

BP

GO:1902855

Regulation of non-motile cilium assembly

N

Y

Added by GOC/SYSCILIA project

71

CC

GO:0097729

9 + 2 motile cilium

N

Y

Added by GOC/SYSCILIA project

72

CC

GO:0097541

Axonemal basal plate

N

Y

Added by GOC/SYSCILIA project

73

CC

GO:1990716

Axonemal central apparatus

N

Y

Added by GOC/SYSCILIA project

74

CC

GO:1990718

Axonemal central pair projection

N

Y

Added by GOC/SYSCILIA project

75

CC

GO:0005879

Axonemal microtubule

N

Y

Modified by GOC/SYSCILIA project

76

CC

GO:0097546

Ciliary base

N

Y

Added by GOC/SYSCILIA project

77

CC

GO:0097543

Ciliary inversin compartment

N

Y

Added by GOC/SYSCILIA project

78

CC

GO:0097542

Ciliary tip

N

Y

Added by GOC/SYSCILIA project

79

CC

GO:0097539

Ciliary transition fiber

N

Y

Added by GOC/SYSCILIA project

80

CC

GO:0036156

Inner dynein arm

N

Y

 

81

CC

GO:0030990

Intraciliary transport particle

N

Y

Modified by GOC/SYSCILIA project

82

CC

GO:1902636

Kinociliary basal body

N

Y

Added by GOC/SYSCILIA project

83

CC

GO:0060091

Kinocilium

N

Y

Modified by GOC/SYSCILIA project

84

CC

GO:0097730

Non-motile cilium

N

Y

Added by GOC/SYSCILIA project

85

CC

GO:0001520

Outer dense fiber

N

Y

Modified by GOC/SYSCILIA project

86

CC

GO:1990075

Periciliary membrane compartment

N

Y

Added by GOC/SYSCILIA project

87

CC

GO:0097227

Sperm annulus

N

Y

 

88

CC

GO:0035686

Sperm fibrous sheath

N

Y

Modified by GOC/SYSCILIA project

89

CC

GO:0097228

Sperm principal piece

N

Y

 
  1. This table shows the ciliary GO terms used for annotation of mouse genes by experimental evidence codes in July 2013 and the additional GO terms used in December 2016. Of the 48 ciliary GO terms used in 2013, eight were no longer used in 2016. Seven of these were considered to be redundant with other existing terms and were thus merged into other ciliary GO terms; the eighth was too general for use in annotations of mouse genes. As of December 2016, an additional 41 ciliary terms, many of them newly added, have been used in experimental annotations of mouse genes for a total of 81 ciliary terms. (a) Term name changed since July 2013